Motif J3_76043.3 Version J3_76043.3 of this group appears in releases 3.95 to 3.97
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 11 | 1-11 | 2-3 | 2-10 | 6-7 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J3_5J7L_009 | 5J7L | 0.4032 | 1 | AA | SSU rRNA | U | 1073 | G | 1074 | * | U | 1083 | G | 1084 | U | 1085 | G | 1087 | * | C | 1098 | G | 1099 | C | 1100 | A | 1101 | A | 1102 | cWW | cWW | tsS | cWW |
| 2 | J3_8CRE_083 | 8CRE | 0.0000 | 0 | CM | SSU rRNA | U | 1278 | G | 1279 | * | U | 1288 | G | 1289 | U | 1290 | C | 1291 | * | G | 1303 | A | 1304 | U | 1305 | A | 1306 | A | 1307 | cWW | cWW | ntsS | cWW |
| 3 | J3_8P9A_081 | 8P9A | 0.0805 | 0 | sR | SSU rRNA | U | 1293 | G | 1294 | * | U | 1303 | G | 1304 | U | 1305 | C | 1306 | * | G | 1318 | A | 1319 | U | 1320 | A | 1321 | A | 1322 | cWW | cWW | tsS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UG*UGUC*GAUAA | 2 |
| UG*UGUUG*CGCAA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| *GU*AUA | 2 |
| *GUU*GCA | 1 |
- Annotations
-
- (3)
- Basepair signature
- cWW-cWW-tSS-F-F-F-F-cWW
- Heat map statistics
- Min 0.08 | Avg 0.20 | Max 0.41
Coloring options: