J3_4DUY_003

3D structure

PDB id

4DUY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, U13C

Experimental method

X-RAY DIFFRACTION

Resolution

3.39 Å

Loop

Sequence

UGGA*UAC*GGAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4DUY_003 not in the Motif Atlas

Homologous match to J3_4LFB_003

Geometric discrepancy: 0.0524

The information below is about J3_4LFB_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_52655.4

Basepair signature

cWW-tSH-cWW-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

4DUY|1|A|U|943
4DUY|1|A|G|944
4DUY|1|A|G|945
4DUY|1|A|A|946
*
4DUY|1|A|U|1235
4DUY|1|A|A|1236
4DUY|1|A|C|1237
*
4DUY|1|A|G|1337
4DUY|1|A|G|1338
4DUY|1|A|A|1339
4DUY|1|A|A|1340

Current chains

Chain A

16S rRNA

Nearby chains

Chain I

ribosomal protein S9

Chain M

ribosomal protein S13

Chain U

ribosomal protein THX