3D structure

PDB id
4DUY (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, U13C
Experimental method
X-RAY DIFFRACTION
Resolution
3.39 Å

Loop

Sequence
CUUG*CAG*CUUACG
Length
13 nucleotides
Bulged bases
4DUY|1|A|C|1214
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4DUY_005 not in the Motif Atlas
Homologous match to J3_4LFB_005
Geometric discrepancy: 0.1668
The information below is about J3_4LFB_005
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_82572.1
Basepair signature
cWW-tSH-tWW-F-cWW-tHW-F-F-cWW
Number of instances in this motif group
2

Unit IDs

4DUY|1|A|C|990
4DUY|1|A|U|991
4DUY|1|A|U|992
4DUY|1|A|G|993
*
4DUY|1|A|C|1045
4DUY|1|A|A|1046
4DUY|1|A|G|1047
*
4DUY|1|A|C|1210
4DUY|1|A|U|1211
4DUY|1|A|U|1212
4DUY|1|A|A|1213
4DUY|1|A|C|1214
4DUY|1|A|G|1215

Current chains

Chain A
16S rRNA

Nearby chains

Chain N
ribosomal protein S14

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.3804 s