J3_4DUY_007

3D structure

PDB id

4DUY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, U13C

Experimental method

X-RAY DIFFRACTION

Resolution

3.39 Å

Loop

Sequence

CGC*GGAC*GGAG

Length

11 nucleotides

Bulged bases

4DUY|1|A|A|1183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4DUY_007 not in the Motif Atlas

Homologous match to J3_4LFB_008

Geometric discrepancy: 0.1353

The information below is about J3_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_82365.4

Basepair signature

cWW-F-cWW-cWW-F-F

Number of instances in this motif group

4

Unit IDs

4DUY|1|A|C|1116
4DUY|1|A|G|1117
4DUY|1|A|C|1118
*
4DUY|1|A|G|1155
4DUY|1|A|G|1156
4DUY|1|A|A|1157
4DUY|1|A|C|1158
*
4DUY|1|A|G|1181
4DUY|1|A|G|1182
4DUY|1|A|A|1183
4DUY|1|A|G|1184

Current chains

Chain A

16S rRNA

Nearby chains

Chain B

ribosomal protein S2

Chain G

ribosomal protein S7

Chain I

ribosomal protein S9

Chain N

ribosomal protein S14