J3_4DUY_012

3D structure

PDB id

4DUY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, U13C

Experimental method

X-RAY DIFFRACTION

Resolution

3.39 Å

Loop

Sequence

UG*UGUUG*CGCAA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4DUY_012 not in the Motif Atlas

Homologous match to J3_5J7L_009

Geometric discrepancy: 0.1047

The information below is about J3_5J7L_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76043.3

Basepair signature

cWW-cWW-tSS-F-F-F-F-cWW

Number of instances in this motif group

3

Unit IDs

4DUY|1|A|U|1073
4DUY|1|A|G|1074
*
4DUY|1|A|U|1083
4DUY|1|A|G|1084
4DUY|1|A|U|1085
4DUY|1|A|U|1086
4DUY|1|A|G|1087
*
4DUY|1|A|C|1098
4DUY|1|A|G|1099
4DUY|1|A|C|1100
4DUY|1|A|A|1101
4DUY|1|A|A|1102

Current chains

Chain A

16S rRNA

Nearby chains

Chain B

ribosomal protein S2

Chain E

ribosomal protein S5