3D structure

PDB id
4DUY (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, U13C
Experimental method
X-RAY DIFFRACTION
Resolution
3.39 Å

Loop

Sequence
CGG*CUAGA*UGACG
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4DUY_014 not in the Motif Atlas
Homologous match to J3_4LFB_015
Geometric discrepancy: 0.034
The information below is about J3_4LFB_015
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_17385.4
Basepair signature
cWW-F-cWW-cWW-tWH-tHS-cWW
Number of instances in this motif group
6

Unit IDs

4DUY|1|A|C|586
4DUY|1|A|G|587
4DUY|1|A|G|588
*
4DUY|1|A|C|651
4DUY|1|A|U|652
4DUY|1|A|A|653
4DUY|1|A|G|654
4DUY|1|A|A|655
*
4DUY|1|A|U|751
4DUY|1|A|G|752
4DUY|1|A|A|753
4DUY|1|A|C|754
4DUY|1|A|G|755

Current chains

Chain A
16S rRNA

Nearby chains

Chain H
ribosomal protein S8
Chain L
ribosomal protein S12
Chain O
ribosomal protein S15
Chain Q
ribosomal protein S17

Coloring options:


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