3D structure

PDB id
4DV0 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, U20G
Experimental method
X-RAY DIFFRACTION
Resolution
3.85 Å

Loop

Sequence
CAAG*CUAGUAA*UGAAUACG
Length
19 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4DV0_002 not in the Motif Atlas
Homologous match to J3_4LFB_002
Geometric discrepancy: 0.0991
The information below is about J3_4LFB_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_25303.4
Basepair signature
cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW
Number of instances in this motif group
4

Unit IDs

4DV0|1|A|C|936
4DV0|1|A|A|937
4DV0|1|A|A|938
4DV0|1|A|G|939
*
4DV0|1|A|C|1344
4DV0|1|A|U|1345
4DV0|1|A|A|1346
4DV0|1|A|G|1347
4DV0|1|A|U|1348
4DV0|1|A|A|1349
4DV0|1|A|A|1350
*
4DV0|1|A|U|1372
4DV0|1|A|G|1373
4DV0|1|A|A|1374
4DV0|1|A|A|1375
4DV0|1|A|U|1376
4DV0|1|A|A|1377
4DV0|1|A|C|1378
4DV0|1|A|G|1379

Current chains

Chain A
16S rRNA

Nearby chains

Chain G
ribosomal protein S7
Chain I
ribosomal protein S9

Coloring options:


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