J3_4DV0_013

3D structure

PDB id

4DV0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, U20G

Experimental method

X-RAY DIFFRACTION

Resolution

3.85 Å

Loop

Sequence

UG*UGUUG*CGCAA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4DV0_013 not in the Motif Atlas

Homologous match to J3_5J7L_009

Geometric discrepancy: 0.1081

The information below is about J3_5J7L_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76043.3

Basepair signature

cWW-cWW-tSS-F-F-F-F-cWW

Number of instances in this motif group

3

Unit IDs

4DV0|1|A|U|1073
4DV0|1|A|G|1074
*
4DV0|1|A|U|1083
4DV0|1|A|G|1084
4DV0|1|A|U|1085
4DV0|1|A|U|1086
4DV0|1|A|G|1087
*
4DV0|1|A|C|1098
4DV0|1|A|G|1099
4DV0|1|A|C|1100
4DV0|1|A|A|1101
4DV0|1|A|A|1102

Current chains

Chain A

16S rRNA

Nearby chains

Chain B

ribosomal protein S2

Chain E

ribosomal protein S5