J3_4DV2_007

3D structure

PDB id

4DV2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, C912A

Experimental method

X-RAY DIFFRACTION

Resolution

3.65 Å

Loop

Sequence

CGC*GGACUGC*GAGGAAGGAG

Length

20 nucleotides

Bulged bases

4DV2|1|A|A|1183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4DV2_007 not in the Motif Atlas

Homologous match to J3_4LFB_018

Geometric discrepancy: 0.1413

The information below is about J3_4LFB_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17791.2

Basepair signature

cWW-F-cHW-cWW-tWH-cWW-F-tSW-tWS-cSH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

4DV2|1|A|C|1116
4DV2|1|A|G|1117
4DV2|1|A|C|1118
*
4DV2|1|A|G|1155
4DV2|1|A|G|1156
4DV2|1|A|A|1157
4DV2|1|A|C|1158
4DV2|1|A|U|1159
4DV2|1|A|G|1160
4DV2|1|A|C|1161
*
4DV2|1|A|G|1175
4DV2|1|A|A|1176
4DV2|1|A|G|1177
4DV2|1|A|G|1178
4DV2|1|A|A|1179
4DV2|1|A|A|1180
4DV2|1|A|G|1181
4DV2|1|A|G|1182
4DV2|1|A|A|1183
4DV2|1|A|G|1184

Current chains

Chain A

16S rRNA

Nearby chains

Chain B

ribosomal protein S2

Chain G

ribosomal protein S7

Chain I

ribosomal protein S9

Chain N

ribosomal protein S14