3D structure

PDB id
4DV2 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, C912A
Experimental method
X-RAY DIFFRACTION
Resolution
3.65 Å

Loop

Sequence
UG*CGCCGAUGG*CAG
Length
14 nucleotides
Bulged bases
4DV2|1|A|U|723
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4DV2_011 not in the Motif Atlas
Homologous match to J3_5J7L_003
Geometric discrepancy: 0.118
The information below is about J3_5J7L_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_11934.4
Basepair signature
cWW-cWW-tWW-cWW-F-F-F-F-F
Number of instances in this motif group
4

Unit IDs

4DV2|1|A|U|672
4DV2|1|A|G|673
*
4DV2|1|A|C|717
4DV2|1|A|G|718
4DV2|1|A|C|719
4DV2|1|A|C|720
4DV2|1|A|G|721
4DV2|1|A|A|722
4DV2|1|A|U|723
4DV2|1|A|G|724
4DV2|1|A|G|725
*
4DV2|1|A|C|732
4DV2|1|A|A|733
4DV2|1|A|G|734

Current chains

Chain A
16S rRNA

Nearby chains

Chain F
ribosomal protein S6
Chain K
ribosomal protein S11
Chain O
ribosomal protein S15
Chain R
ribosomal protein S18

Coloring options:


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