3D structure

PDB id
4DV5 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, A914G, bound with streptomycin
Experimental method
X-RAY DIFFRACTION
Resolution
3.68 Å

Loop

Sequence
CGG*CUAGA*UGACG
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4DV5_015 not in the Motif Atlas
Homologous match to J3_4LFB_015
Geometric discrepancy: 0.0624
The information below is about J3_4LFB_015
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_17385.5
Basepair signature
cWW-F-cWW-cWW-tWH-tHS-cWW
Number of instances in this motif group
5

Unit IDs

4DV5|1|A|C|586
4DV5|1|A|G|587
4DV5|1|A|G|588
*
4DV5|1|A|C|651
4DV5|1|A|U|652
4DV5|1|A|A|653
4DV5|1|A|G|654
4DV5|1|A|A|655
*
4DV5|1|A|U|751
4DV5|1|A|G|752
4DV5|1|A|A|753
4DV5|1|A|C|754
4DV5|1|A|G|755

Current chains

Chain A
16S rRNA

Nearby chains

Chain H
ribosomal protein S8
Chain L
ribosomal protein S12
Chain O
ribosomal protein S15
Chain Q
ribosomal protein S17

Coloring options:


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