J3_4GKJ_005
3D structure
- PDB id
- 4GKJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a human mitochondrial anticodon stem loop (ASL) of transfer RNA Methionine (TRNAMET) bound to an mRNA with an AUG-codon in the A-site and paromomycin.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- CUUG*CAG*CUUACG
- Length
- 13 nucleotides
- Bulged bases
- 4GKJ|1|A|U|1193
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4GKJ_005 not in the Motif Atlas
- Homologous match to J3_4LFB_005
- Geometric discrepancy: 0.142
- The information below is about J3_4LFB_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_82572.1
- Basepair signature
- cWW-tSH-tWW-F-cWW-tHW-F-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
4GKJ|1|A|C|967
4GKJ|1|A|U|968
4GKJ|1|A|U|969
4GKJ|1|A|G|970
*
4GKJ|1|A|C|1027
4GKJ|1|A|A|1028
4GKJ|1|A|G|1029
*
4GKJ|1|A|C|1191
4GKJ|1|A|U|1192
4GKJ|1|A|U|1193
4GKJ|1|A|A|1194
4GKJ|1|A|C|1195
4GKJ|1|A|G|1196
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain N
- 30S ribosomal protein S14 type Z
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