J3_4GKJ_008
3D structure
- PDB id
- 4GKJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a human mitochondrial anticodon stem loop (ASL) of transfer RNA Methionine (TRNAMET) bound to an mRNA with an AUG-codon in the A-site and paromomycin.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- CAAUG*CCCAGUUC*GCCG
- Length
- 17 nucleotides
- Bulged bases
- 4GKJ|1|A|U|1221
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4GKJ_008 not in the Motif Atlas
- Homologous match to J3_4LFB_009
- Geometric discrepancy: 0.09
- The information below is about J3_4LFB_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_37047.6
- Basepair signature
- cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F
- Number of instances in this motif group
- 4
Unit IDs
4GKJ|1|A|C|1218
4GKJ|1|A|A|1219
4GKJ|1|A|A|1220
4GKJ|1|A|U|1221
4GKJ|1|A|G|1222
*
4GKJ|1|A|C|1277
4GKJ|1|A|C|1278
4GKJ|1|A|C|1279
4GKJ|1|A|A|1280
4GKJ|1|A|G|1281
4GKJ|1|A|U|1282
4GKJ|1|A|U|1283
4GKJ|1|A|C|1284
*
4GKJ|1|A|G|1315
4GKJ|1|A|C|1316
4GKJ|1|A|C|1317
4GKJ|1|A|G|1318
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain G
- 30S ribosomal protein S7
- Chain M
- 30S ribosomal protein S13
- Chain V
- 30S ribosomal protein Thx
Coloring options: