J3_4GKK_005
3D structure
- PDB id
- 4GKK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a human mitochondrial anticodon stem loop (ASL) of transfer RNA Methionine (TRNAMET) bound to an mRNA with an AUA-codon in the A-site and paromomycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- CUUG*CAG*CUUACG
- Length
- 13 nucleotides
- Bulged bases
- 4GKK|1|A|U|1193
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4GKK_005 not in the Motif Atlas
- Homologous match to J3_4LFB_005
- Geometric discrepancy: 0.1709
- The information below is about J3_4LFB_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_84394.1
- Basepair signature
- cWW-tWH-F-F-cWW-F-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
4GKK|1|A|C|967
4GKK|1|A|U|968
4GKK|1|A|U|969
4GKK|1|A|G|970
*
4GKK|1|A|C|1027
4GKK|1|A|A|1028
4GKK|1|A|G|1029
*
4GKK|1|A|C|1191
4GKK|1|A|U|1192
4GKK|1|A|U|1193
4GKK|1|A|A|1194
4GKK|1|A|C|1195
4GKK|1|A|G|1196
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain N
- 30S ribosomal protein S14 type Z
Coloring options: