J3_4GKK_018
3D structure
- PDB id
- 4GKK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a human mitochondrial anticodon stem loop (ASL) of transfer RNA Methionine (TRNAMET) bound to an mRNA with an AUA-codon in the A-site and paromomycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- CGC*GGACUGC*GAGGAAGGAG
- Length
- 20 nucleotides
- Bulged bases
- 4GKK|1|A|A|1164
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4GKK_018 not in the Motif Atlas
- Homologous match to J3_4LFB_018
- Geometric discrepancy: 0.0968
- The information below is about J3_4LFB_018
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17791.2
- Basepair signature
- cWW-F-cHW-cWW-tWH-cWW-F-tSW-tWS-cSH-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
4GKK|1|A|C|1098
4GKK|1|A|G|1099
4GKK|1|A|C|1100
*
4GKK|1|A|G|1137
4GKK|1|A|G|1138
4GKK|1|A|A|1139
4GKK|1|A|C|1140
4GKK|1|A|U|1141
4GKK|1|A|G|1142
4GKK|1|A|C|1143
*
4GKK|1|A|G|1156
4GKK|1|A|A|1157
4GKK|1|A|G|1158
4GKK|1|A|G|1159
4GKK|1|A|A|1160
4GKK|1|A|A|1161
4GKK|1|A|G|1162
4GKK|1|A|G|1163
4GKK|1|A|A|1164
4GKK|1|A|G|1165
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain B
- 30S ribosomal protein S2
- Chain G
- 30S ribosomal protein S7
- Chain I
- 30S ribosomal protein S9
- Chain J
- 30S ribosomal protein S10
- Chain N
- 30S ribosomal protein S14 type Z
Coloring options: