J3_4IO9_001
3D structure
- PDB id
- 4IO9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of compound 4d bound to large ribosomal subunit (50S) from Deinococcus radiodurans
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- UGAGCUA*UAG*CGAA
- Length
- 14 nucleotides
- Bulged bases
- 4IO9|1|X|G|699, 4IO9|1|X|G|805
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4IO9_001 not in the Motif Atlas
- Homologous match to J3_7RQB_004
- Geometric discrepancy: 0.1119
- The information below is about J3_7RQB_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_39238.4
- Basepair signature
- cWW-tWH-cWW-tSW-F-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
4IO9|1|X|U|696
4IO9|1|X|G|697
4IO9|1|X|A|698
4IO9|1|X|G|699
4IO9|1|X|C|700
4IO9|1|X|U|701
4IO9|1|X|A|702
*
4IO9|1|X|U|786
4IO9|1|X|A|787
4IO9|1|X|G|788
*
4IO9|1|X|C|804
4IO9|1|X|G|805
4IO9|1|X|A|806
4IO9|1|X|A|807
Current chains
- Chain X
- 23S ribosomal RNA
Nearby chains
- Chain 2
- 50S ribosomal protein L34
- Chain A
- 50S ribosomal protein L2
- Chain C
- 50S ribosomal protein L4
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