J3_4IO9_003

3D structure

PDB id

4IO9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound 4d bound to large ribosomal subunit (50S) from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGUAAG*CGA*UAAG

Length

13 nucleotides

Bulged bases

4IO9|1|X|A|1315

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4IO9_003 not in the Motif Atlas

Homologous match to J3_7A0S_006

Geometric discrepancy: 0.0647

The information below is about J3_7A0S_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.7

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

4IO9|1|X|C|1311
4IO9|1|X|G|1312
4IO9|1|X|U|1313
4IO9|1|X|A|1314
4IO9|1|X|A|1315
4IO9|1|X|G|1316
*
4IO9|1|X|C|1641
4IO9|1|X|G|1642
4IO9|1|X|A|1643
*
4IO9|1|X|U|1656
4IO9|1|X|A|1657
4IO9|1|X|A|1658
4IO9|1|X|G|1659

Current chains

Chain X

23S ribosomal RNA

Nearby chains