J3_4IO9_006

3D structure

PDB id

4IO9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound 4d bound to large ribosomal subunit (50S) from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

UUG*CUAAC*GGACCG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4IO9_006 not in the Motif Atlas

Homologous match to J3_5J7L_044

Geometric discrepancy: 0.141

The information below is about J3_5J7L_044

Detailed Annotation

Kink-turn 3-way junction

Broad Annotation

No text annotation

Motif group

J3_89368.5

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

4IO9|1|X|U|2074
4IO9|1|X|U|2075
4IO9|1|X|G|2076
*
4IO9|1|X|C|2179
4IO9|1|X|U|2180
4IO9|1|X|A|2181
4IO9|1|X|A|2182
4IO9|1|X|C|2183
*
4IO9|1|X|G|2202
4IO9|1|X|G|2203
4IO9|1|X|A|2204
4IO9|1|X|C|2205
4IO9|1|X|C|2206
4IO9|1|X|G|2207

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain A

50S ribosomal protein L2

Chain U

50S ribosomal protein L28