J3_4IO9_007
3D structure
- PDB id
- 4IO9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of compound 4d bound to large ribosomal subunit (50S) from Deinococcus radiodurans
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- CUC*GAG*UAGAAG
- Length
- 12 nucleotides
- Bulged bases
- 4IO9|1|X|G|2313
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4IO9_007 not in the Motif Atlas
- Homologous match to J3_7RQB_011
- Geometric discrepancy: 0.1436
- The information below is about J3_7RQB_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_91491.4
- Basepair signature
- cWW-F-tWW-tHW-cWW-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
4IO9|1|X|C|2274
4IO9|1|X|U|2275
4IO9|1|X|C|2276
*
4IO9|1|X|G|2300
4IO9|1|X|A|2301
4IO9|1|X|G|2302
*
4IO9|1|X|U|2311
4IO9|1|X|A|2312
4IO9|1|X|G|2313
4IO9|1|X|A|2314
4IO9|1|X|A|2315
4IO9|1|X|G|2316
Current chains
- Chain X
- 23S ribosomal RNA
Nearby chains
- Chain D
- 50S ribosomal protein L5
- Chain L
- 50S ribosomal protein L18
- Chain T
- 50S ribosomal protein L27
- Chain Y
- 5S ribosomal RNA; 5S rRNA
Coloring options: