Motif J3_91491.4 Version J3_91491.4 of this group appears in releases 3.80 to 3.86
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | break | 9 | 10 | 11 | 1-3 | 1-11 | 3-7 | 3-10 | 5-6 | 8-9 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J3_5J7L_045 | 5J7L | 0.2022 | 1 | DA | LSU rRNA | C | 2332 | A | 2333 | A | 2335 | A | 2336 | G | 2337 | * | C | 2295 | U | 2296 | A | 2297 | * | U | 2321 | A | 2322 | G | 2323 | cWW | tHW | tWW | cWW | cWW | |
| 2 | J3_4WF9_008 | 4WF9 | 0.0000 | 1 | X | LSU rRNA | C | 2359 | A | 2360 | A | 2362 | A | 2363 | G | 2364 | * | C | 2322 | U | 2323 | C | 2324 | * | G | 2348 | A | 2349 | G | 2350 | cWW | tHW | tWW | cWW | cWW | |
| 3 | J3_7RQB_011 | 7RQB | 0.1776 | 1 | 1A | LSU rRNA | U | 2332 | A | 2333 | A | 2335 | A | 2336 | G | 2337 | * | C | 2295 | U | 2296 | C | 2297 | * | G | 2321 | A | 2322 | G | 2323 | ncSs | cWW | tHW | tWW | cWW | cWW |
| 4 | J3_4V9F_008 | 4V9F | 0.1260 | 1 | 0 | LSU rRNA | C | 2366 | A | 2367 | A | 2369 | A | 2370 | G | 2371 | * | C | 2329 | U | 2330 | C | 2331 | * | G | 2355 | A | 2356 | G | 2357 | cWW | tHW | tWW | cWW | cWW | |
| 5 | J3_5TBW_013 | 5TBW | 0.1895 | 1 | 1 | LSU rRNA | U | 2701 | A | 2702 | A | 2704 | A | 2705 | G | 2706 | * | C | 2664 | U | 2665 | C | 2666 | * | G | 2690 | A | 2691 | A | 2692 | ncSs | cWW | tHW | tWW | cWW | cWW |
| 6 | J3_8C3A_010 | 8C3A | 0.2043 | 1 | 1 | LSU rRNA | U | 2673 | A | 2674 | A | 2676 | A | 2677 | G | 2678 | * | C | 2636 | U | 2637 | C | 2638 | * | G | 2662 | A | 2663 | A | 2664 | cWW | tHW | ntWW | cWW | cWW | |
| 7 | J3_7A0S_010 | 7A0S | 0.2509 | 1 | X | LSU rRNA | U | 2311 | A | 2312 | A | 2314 | A | 2315 | G | 2316 | * | C | 2274 | U | 2275 | C | 2276 | * | G | 2300 | A | 2301 | G | 2302 | cWW | ncWB | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUC*GAG*UAGAAG | 2 |
| CUC*GAA*UAAAAG | 2 |
| CUA*UAG*CAUAAG | 1 |
| CUC*GAG*CAUAAG | 1 |
| CUC*GAG*CAAAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| U*A*AAAA | 3 |
| U*A*AUAA | 2 |
| U*A*AGAA | 2 |
Release history
| Release | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 |
|---|---|---|---|---|---|---|---|
| Date | 2024-01-31 | 2024-02-28 | 2024-03-27 | 2024-04-24 | 2024-05-22 | 2024-06-19 | 2024-07-17 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (7)
- Basepair signature
- cWW-F-tWW-tHW-cWW-F-cWW
- Heat map statistics
- Min 0.11 | Avg 0.19 | Max 0.30
Coloring options: