J3_4IO9_014
3D structure
- PDB id
- 4IO9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of compound 4d bound to large ribosomal subunit (50S) from Deinococcus radiodurans
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- GC*GUGAAAAGAAC*GAGUGAAAGAGAACC
- Length
- 28 nucleotides
- Bulged bases
- 4IO9|1|X|G|514, 4IO9|1|X|A|518
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4IO9_014 not in the Motif Atlas
- Homologous match to J3_7A0S_015
- Geometric discrepancy: 0.0502
- The information below is about J3_7A0S_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17917.1
- Basepair signature
- cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F
- Number of instances in this motif group
- 9
Unit IDs
4IO9|1|X|G|30
4IO9|1|X|C|31
*
4IO9|1|X|G|485
4IO9|1|X|U|486
4IO9|1|X|G|487
4IO9|1|X|A|488
4IO9|1|X|A|489
4IO9|1|X|A|490
4IO9|1|X|A|491
4IO9|1|X|G|492
4IO9|1|X|A|493
4IO9|1|X|A|494
4IO9|1|X|C|495
*
4IO9|1|X|G|506
4IO9|1|X|A|507
4IO9|1|X|G|508
4IO9|1|X|U|509
4IO9|1|X|G|510
4IO9|1|X|A|511
4IO9|1|X|A|512
4IO9|1|X|A|513
4IO9|1|X|G|514
4IO9|1|X|A|515
4IO9|1|X|G|516
4IO9|1|X|A|517
4IO9|1|X|A|518
4IO9|1|X|C|519
4IO9|1|X|C|520
Current chains
- Chain X
- 23S ribosomal RNA
Nearby chains
- Chain N
- 50S ribosomal protein L20
- Chain P
- 50S ribosomal protein L22
- Chain R
- 50S ribosomal protein L24
Coloring options: