J3_4IO9_016

3D structure

PDB id

4IO9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound 4d bound to large ribosomal subunit (50S) from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGAAG*CACCUCAGAA*UGUAG

Length

20 nucleotides

Bulged bases

4IO9|1|X|C|332

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4IO9_016 not in the Motif Atlas

Homologous match to J3_9DFE_006

Geometric discrepancy: 0.096

The information below is about J3_9DFE_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_77124.1

Basepair signature

cWW-tSH-cHH-cSW-F-tHS-cWW-cWW-F-F-cWW-F

Number of instances in this motif group

4

Unit IDs

4IO9|1|X|C|308
4IO9|1|X|G|309
4IO9|1|X|A|310
4IO9|1|X|A|311
4IO9|1|X|G|312
*
4IO9|1|X|C|327
4IO9|1|X|A|328
4IO9|1|X|C|329
4IO9|1|X|C|330
4IO9|1|X|U|331
4IO9|1|X|C|332
4IO9|1|X|A|333
4IO9|1|X|G|334
4IO9|1|X|A|335
4IO9|1|X|A|336
*
4IO9|1|X|U|348
4IO9|1|X|G|349
4IO9|1|X|U|350
4IO9|1|X|A|351
4IO9|1|X|G|352

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L4

Chain R

50S ribosomal protein L24