J3_4IO9_018

3D structure

PDB id

4IO9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound 4d bound to large ribosomal subunit (50S) from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4IO9_018 not in the Motif Atlas

Homologous match to J3_7A0S_019

Geometric discrepancy: 0.0755

The information below is about J3_7A0S_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.3

Basepair signature

cWW-tSH-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

4IO9|1|X|G|1438
4IO9|1|X|G|1439
4IO9|1|X|G|1440
4IO9|1|X|A|1441
4IO9|1|X|C|1442
4IO9|1|X|G|1443
*
4IO9|1|X|C|1580
4IO9|1|X|C|1581
*
4IO9|1|X|G|1584
4IO9|1|X|A|1585
4IO9|1|X|A|1586
4IO9|1|X|A|1587
4IO9|1|X|A|1588
4IO9|1|X|G|1589
4IO9|1|X|C|1590

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain A

50S ribosomal protein L2