J3_4IOA_001

3D structure

PDB id

4IOA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound 4e bound to large ribosomal subunit (50S) from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

UGAGCUA*UAG*CGAA

Length

14 nucleotides

Bulged bases

4IOA|1|X|G|699, 4IOA|1|X|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_39238.1

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

6

Unit IDs

4IOA|1|X|U|696
4IOA|1|X|G|697
4IOA|1|X|A|698
4IOA|1|X|G|699
4IOA|1|X|C|700
4IOA|1|X|U|701
4IOA|1|X|A|702
*
4IOA|1|X|U|786
4IOA|1|X|A|787
4IOA|1|X|G|788
*
4IOA|1|X|C|804
4IOA|1|X|G|805
4IOA|1|X|A|806
4IOA|1|X|A|807

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain A

50S ribosomal protein L2

Chain C

50S ribosomal protein L4