J3_4IOA_004

3D structure

PDB id

4IOA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound 4e bound to large ribosomal subunit (50S) from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CAAG*CGCAAAC*GUG

Length

14 nucleotides

Bulged bases

4IOA|1|X|A|1625

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_84189.1

Basepair signature

cWW-tSH-tWW-tHH-F-tHW-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

4IOA|1|X|C|1319
4IOA|1|X|A|1320
4IOA|1|X|A|1321
4IOA|1|X|G|1322
*
4IOA|1|X|C|1621
4IOA|1|X|G|1622
4IOA|1|X|C|1623
4IOA|1|X|A|1624
4IOA|1|X|A|1625
4IOA|1|X|A|1626
4IOA|1|X|C|1627
*
4IOA|1|X|G|1636
4IOA|1|X|U|1637
4IOA|1|X|G|1638

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34