J3_4IOA_005

3D structure

PDB id

4IOA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound 4e bound to large ribosomal subunit (50S) from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CUG*CUAAGGUAG*CGAAAG

Length

18 nucleotides

Bulged bases

4IOA|1|X|A|1954

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_20944.1

Basepair signature

cWW-F-cHW-F-cWW-tSS-F-cSS-cSH-tWH-tHS-cWW

Number of instances in this motif group

1

Unit IDs

4IOA|1|X|C|1825
4IOA|1|X|U|1826
4IOA|1|X|G|1827
*
4IOA|1|X|C|1888
4IOA|1|X|U|1909
4IOA|1|X|A|1910
4IOA|1|X|A|1911
4IOA|1|X|G|1912
4IOA|1|X|G|1913
4IOA|1|X|U|1914
4IOA|1|X|A|1915
4IOA|1|X|G|1916
*
4IOA|1|X|C|1950
4IOA|1|X|G|1951
4IOA|1|X|A|1952
4IOA|1|X|A|1953
4IOA|1|X|A|1954
4IOA|1|X|G|1955

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain A

50S ribosomal protein L2