J3_4IOA_006

3D structure

PDB id

4IOA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound 4e bound to large ribosomal subunit (50S) from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

UUG*CUAAC*GGACCG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Kink-turn in J3

Broad Annotation

No text annotation

Motif group

J3_89368.1

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

4IOA|1|X|U|2074
4IOA|1|X|U|2075
4IOA|1|X|G|2076
*
4IOA|1|X|C|2179
4IOA|1|X|U|2180
4IOA|1|X|A|2181
4IOA|1|X|A|2182
4IOA|1|X|C|2183
*
4IOA|1|X|G|2202
4IOA|1|X|G|2203
4IOA|1|X|A|2204
4IOA|1|X|C|2205
4IOA|1|X|C|2206
4IOA|1|X|G|2207

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain A

50S ribosomal protein L2

Chain U

50S ribosomal protein L28