J3_4IOA_008
3D structure
- PDB id
- 4IOA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of compound 4e bound to large ribosomal subunit (50S) from Deinococcus radiodurans
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- CAUC*GUU*AUUAAAG
- Length
- 14 nucleotides
- Bulged bases
- 4IOA|1|X|A|2497, 4IOA|1|X|U|2498
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_32601.1
- Basepair signature
- cWW-tWH-cHW-tSH-cWW-tSS-F-cSS-cWW
- Number of instances in this motif group
- 4
Unit IDs
4IOA|1|X|C|2496
4IOA|1|X|A|2497
4IOA|1|X|U|2498
4IOA|1|X|C|2499
*
4IOA|1|X|G|2524
4IOA|1|X|U|2525
4IOA|1|X|U|2526
*
4IOA|1|X|A|2540
4IOA|1|X|U|2541
4IOA|1|X|U|2542
4IOA|1|X|A|2543
4IOA|1|X|A|2544
4IOA|1|X|A|2545
4IOA|1|X|G|2546
Current chains
- Chain X
- 23S ribosomal RNA
Nearby chains
- Chain G
- 50S ribosomal protein L13
- Chain H
- 50S ribosomal protein L14
Coloring options: