J3_4IOA_010

3D structure

PDB id

4IOA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound 4e bound to large ribosomal subunit (50S) from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CCCAUAG*CGC*GUCAG

Length

15 nucleotides

Bulged bases

4IOA|1|Y|C|111

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

5S rRNA

Broad Annotation

No text annotation

Motif group

J3_32471.1

Basepair signature

cWW-cSW-tSS-F-F-cWW-F-cWW

Number of instances in this motif group

1

Unit IDs

4IOA|1|Y|C|12
4IOA|1|Y|C|13
4IOA|1|Y|C|14
4IOA|1|Y|A|15
4IOA|1|Y|U|16
4IOA|1|Y|A|17
4IOA|1|Y|G|18
*
4IOA|1|Y|C|70
4IOA|1|Y|G|71
4IOA|1|Y|C|72
*
4IOA|1|Y|G|109
4IOA|1|Y|U|110
4IOA|1|Y|C|111
4IOA|1|Y|A|112
4IOA|1|Y|G|113

Current chains

Chain Y

5S ribosomal RNA

Nearby chains

Chain L

50S ribosomal protein L18

Chain S

50S ribosomal protein L25

Chain T

50S ribosomal protein L27

Chain X

Large subunit ribosomal RNA; LSU rRNA