J3_4IOA_018

3D structure

PDB id

4IOA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound 4e bound to large ribosomal subunit (50S) from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GGAGGUUG*CACCCUUCAAAG*CAC

Length

23 nucleotides

Bulged bases

4IOA|1|X|U|1072

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4IOA|1|X|G|1066
4IOA|1|X|G|1067
4IOA|1|X|A|1068
4IOA|1|X|G|1069
4IOA|1|X|G|1070
4IOA|1|X|U|1071
4IOA|1|X|U|1072
4IOA|1|X|G|1073
*
4IOA|1|X|C|1087
4IOA|1|X|A|1088
4IOA|1|X|C|1089
4IOA|1|X|C|1090
4IOA|1|X|C|1091
4IOA|1|X|U|1092
4IOA|1|X|U|1093
4IOA|1|X|C|1094
4IOA|1|X|A|1095
4IOA|1|X|A|1096
4IOA|1|X|A|1097
4IOA|1|X|G|1098
*
4IOA|1|X|C|1113
4IOA|1|X|A|1114
4IOA|1|X|C|1115

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain 4

50S ribosomal protein L36

Chain F

50S ribosomal protein L11

Chain J

50S ribosomal protein L16

Chain S

50S ribosomal protein L25