J3_4JI0_004
3D structure
- PDB id
- 4JI0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal Structure of 30S ribosomal subunit from Thermus thermophilus
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.49 Å
Loop
- Sequence
- UUUAAUUC*GAAGAACCUUACC*GGGCGA
- Length
- 27 nucleotides
- Bulged bases
- 4JI0|1|A|A|975, 4JI0|1|A|G|976, 4JI0|1|A|A|978
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4JI0_004 not in the Motif Atlas
- Geometric match to J3_6CZR_062
- Geometric discrepancy: 0.1498
- The information below is about J3_6CZR_062
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_59791.1
- Basepair signature
- cWW-F-F-F-F-F-tSS-F-F-F-F-F-F-F-F-F-F-cWW-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
4JI0|1|A|U|955
4JI0|1|A|U|956
4JI0|1|A|U|957
4JI0|1|A|A|958
4JI0|1|A|A|959
4JI0|1|A|U|960
4JI0|1|A|U|961
4JI0|1|A|C|962
*
4JI0|1|A|G|973
4JI0|1|A|A|974
4JI0|1|A|A|975
4JI0|1|A|G|976
4JI0|1|A|A|977
4JI0|1|A|A|978
4JI0|1|A|C|979
4JI0|1|A|C|980
4JI0|1|A|U|981
4JI0|1|A|U|982
4JI0|1|A|A|983
4JI0|1|A|C|984
4JI0|1|A|C|985
*
4JI0|1|A|G|1220
4JI0|1|A|G|1221
4JI0|1|A|G|1222
4JI0|1|A|C|1223
4JI0|1|A|G|1224
4JI0|1|A|A|1225
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain J
- ribosomal protein S10
- Chain M
- ribosomal protein S13
- Chain N
- ribosomal protein S14
- Chain S
- ribosomal protein S19
Coloring options: