J3_4JI2_008
3D structure
- PDB id
- 4JI2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal Structure of 30S ribosomal subunit from Thermus thermophilus
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.64 Å
Loop
- Sequence
- CGC*GGACUGC*GAGGAAGGAG
- Length
- 20 nucleotides
- Bulged bases
- 4JI2|1|A|A|1183
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4JI2_008 not in the Motif Atlas
- Geometric match to J3_4LFB_018
- Geometric discrepancy: 0.1517
- The information below is about J3_4LFB_018
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17791.2
- Basepair signature
- cWW-F-cHW-cWW-tWH-cWW-F-tSW-tWS-cSH-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
4JI2|1|A|C|1116
4JI2|1|A|G|1117
4JI2|1|A|C|1118
*
4JI2|1|A|G|1155
4JI2|1|A|G|1156
4JI2|1|A|A|1157
4JI2|1|A|C|1158
4JI2|1|A|U|1159
4JI2|1|A|G|1160
4JI2|1|A|C|1161
*
4JI2|1|A|G|1175
4JI2|1|A|A|1176
4JI2|1|A|G|1177
4JI2|1|A|G|1178
4JI2|1|A|A|1179
4JI2|1|A|A|1180
4JI2|1|A|G|1181
4JI2|1|A|G|1182
4JI2|1|A|A|1183
4JI2|1|A|G|1184
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain B
- RIBOSOMAL PROTEIN S2
- Chain I
- RIBOSOMAL PROTEIN S9
- Chain J
- RIBOSOMAL PROTEIN S10
- Chain N
- RIBOSOMAL PROTEIN S14
Coloring options: