J3_4JI6_016

3D structure

PDB id

4JI6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.55 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

4JI6|1|A|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4JI6_016 not in the Motif Atlas

Homologous match to J3_6CZR_063

Geometric discrepancy: 0.2377

The information below is about J3_6CZR_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.1

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

3

Unit IDs

4JI6|1|A|C|990
4JI6|1|A|U|991
4JI6|1|A|U|992
4JI6|1|A|G|993
4JI6|1|A|A|994
4JI6|1|A|C|995
4JI6|1|A|A|996
4JI6|1|A|U|997
*
4JI6|1|A|A|1044
4JI6|1|A|C|1045
4JI6|1|A|A|1046
4JI6|1|A|G|1047
*
4JI6|1|A|C|1210
4JI6|1|A|U|1211
4JI6|1|A|U|1212
4JI6|1|A|A|1213
4JI6|1|A|C|1214
4JI6|1|A|G|1215

Current chains

Chain A

16S rRNA

Nearby chains

Chain N

RIBOSOMAL PROTEIN S14