3D structure

PDB id
4KHP (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the Thermus thermophilus 30S ribosomal subunit in complex with de-6-MSA-pactamycin
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
CAAG*CUAGUAA*UGAAUACG
Length
19 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4KHP_002 not in the Motif Atlas
Homologous match to J3_4LFB_002
Geometric discrepancy: 0.0578
The information below is about J3_4LFB_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_85722.1
Basepair signature
cWW-F-F-cSS-F-cWW-tHH-tWW-F-tWH-tHS-cSH-cWW
Number of instances in this motif group
5

Unit IDs

4KHP|1|A|C|914
4KHP|1|A|A|915
4KHP|1|A|A|916
4KHP|1|A|G|917
*
4KHP|1|A|C|1326
4KHP|1|A|U|1327
4KHP|1|A|A|1328
4KHP|1|A|G|1329
4KHP|1|A|U|1330
4KHP|1|A|A|1331
4KHP|1|A|A|1332
*
4KHP|1|A|U|1355
4KHP|1|A|G|1356
4KHP|1|A|A|1357
4KHP|1|A|A|1358
4KHP|1|A|U|1359
4KHP|1|A|A|1360
4KHP|1|A|C|1361
4KHP|1|A|G|1362

Current chains

Chain A
16S Ribosomal RNA

Nearby chains

Chain G
30S Ribosomal protein S7
Chain I
30S Ribosomal protein S9

Coloring options:


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