J3_4KHP_005
3D structure
- PDB id
- 4KHP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Thermus thermophilus 30S ribosomal subunit in complex with de-6-MSA-pactamycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CUUG*CAG*CUUACG
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4KHP_005 not in the Motif Atlas
- Homologous match to J3_4LFB_005
- Geometric discrepancy: 0.1058
- The information below is about J3_4LFB_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_84394.1
- Basepair signature
- cWW-tWH-F-F-cWW-F-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
4KHP|1|A|C|968
4KHP|1|A|U|969
4KHP|1|A|U|970
4KHP|1|A|G|971
*
4KHP|1|A|C|1028
4KHP|1|A|A|1029
4KHP|1|A|G|1030
*
4KHP|1|A|C|1192
4KHP|1|A|U|1193
4KHP|1|A|U|1194
4KHP|1|A|A|1195
4KHP|1|A|C|1196
4KHP|1|A|G|1197
Current chains
- Chain A
- 16S Ribosomal RNA
Nearby chains
- Chain N
- 30S Ribosomal protein S14
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