J3_4KHP_008
3D structure
- PDB id
- 4KHP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Thermus thermophilus 30S ribosomal subunit in complex with de-6-MSA-pactamycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CAAUG*CCCAGUUC*GCCG
- Length
- 17 nucleotides
- Bulged bases
- 4KHP|1|A|U|1222
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4KHP_008 not in the Motif Atlas
- Homologous match to J3_4LFB_009
- Geometric discrepancy: 0.0843
- The information below is about J3_4LFB_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_03192.1
- Basepair signature
- cWW-cSS-tHW-F-F-F-cWW-cWW-cSH-cSH-F
- Number of instances in this motif group
- 5
Unit IDs
4KHP|1|A|C|1219
4KHP|1|A|A|1220
4KHP|1|A|A|1221
4KHP|1|A|U|1222
4KHP|1|A|G|1223
*
4KHP|1|A|C|1278
4KHP|1|A|C|1279
4KHP|1|A|C|1280
4KHP|1|A|A|1281
4KHP|1|A|G|1282
4KHP|1|A|U|1283
4KHP|1|A|U|1284
4KHP|1|A|C|1285
*
4KHP|1|A|G|1316
4KHP|1|A|C|1317
4KHP|1|A|C|1318
4KHP|1|A|G|1319
Current chains
- Chain A
- 16S Ribosomal RNA
Nearby chains
- Chain G
- 30S Ribosomal protein S7
- Chain M
- 30S Ribosomal protein S13
- Chain U
- 30S Ribosomal protein THX
Coloring options: