J3_4KZ2_001

3D structure

PDB id

4KZ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of phi29 pRNA 3WJ Core

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

GUG*CUUUG*UC

Length

10 nucleotides

Bulged bases

4KZ2|1|B|U|11

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

phi29 pRNA

Broad Annotation

No text annotation

Motif group

J3_41097.1

Basepair signature

cWW-cWW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

4KZ2|1|A|G|8
4KZ2|1|A|U|9
4KZ2|1|A|G|10
*
4KZ2|1|B|C|9
4KZ2|1|B|U|10
4KZ2|1|B|U|11
4KZ2|1|B|U|12
4KZ2|1|B|G|13
*
4KZ2|1|C|U|8
4KZ2|1|C|C|9

Current chains

Chain A

phi29 pRNA 3WJ core RNA 18 mer

Chain B

phi29 pRNA 3WJ core RNA 20 mer

Chain C

phi29 pRNA 3WJ core RNA 16 mer

Nearby chains