Motif J3_38133.1 Version J3_38133.1 of this group appears in releases 4.1 to 4.1
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | break | 4 | 5 | 6 | 7 | break | 8 | 9 | 1-9 | 2-5 | 3-4 | 7-8 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J3_3R4F_002 | 3R4F | 0.0000 | 1 | phi29 pRNA | A | pRNA | G | 4 | U | 5 | G | 6 | * | C | 43 | U | 44 | U | 46 | G | 47 | * | U | 62 | C | 63 | cWW | ncWw | cWW | cWW |
| 2 | J3_4KZ2_001 | 4KZ2 | 0.4361 | 1 | phi29 pRNA | A+B+C | phi29 pRNA 3WJ core RNA 18 mer + phi29 pRNA 3WJ core RNA 16 mer | G | 8 | U | 9 | G | 10 | * | C | 9 | U | 10 | U | 12 | G | 13 | * | U | 8 | C | 9 | cWW | cWw | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUG*CUUUG*UC | 2 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| U*UUU* | 2 |
Release history
| Release | 4.1 |
|---|---|
| Date | 2025-09-10 |
| Status | New id, no parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- phi29 pRNA (2)
- Basepair signature
- cWW-cWW-cWW-cWW-F
- Heat map statistics
- Min 0.44 | Avg 0.22 | Max 0.44
Coloring options: