J3_4KZX_011

3D structure

PDB id

4KZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 40S ribosomal subunit in complex with eIF1.

Experimental method

X-RAY DIFFRACTION

Resolution

7.81 Å

Loop

Sequence

AG*CGCAAAU*AGU

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4KZX_011 not in the Motif Atlas

Geometric match to J3_4V88_078

Geometric discrepancy: 0.1334

The information below is about J3_4V88_078

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_67856.1

Basepair signature

cWW-F-cWW-F-F-cSW-F-cWW

Number of instances in this motif group

5

Unit IDs

4KZX|1|i|A|40
4KZX|1|i|G|41
*
4KZX|1|i|C|471
4KZX|1|i|G|472
4KZX|1|i|C|473
4KZX|1|i|A|474
4KZX|1|i|A|475
4KZX|1|i|A|476
4KZX|1|i|U|477
*
4KZX|1|i|A|502
4KZX|1|i|G|503
4KZX|1|i|U|504

Current chains

Chain i

18S ribosomal RNA

Nearby chains

Chain X

40S ribosomal protein S23