J3_4KZY_011

3D structure

PDB id

4KZY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 40S ribosomal subunit in complex with eIF1 and eIF1A.

Experimental method

X-RAY DIFFRACTION

Resolution

7.01 Å

Loop

Sequence

AG*CGCAAAU*AGU

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4KZY_011 not in the Motif Atlas

Geometric match to J3_4V88_078

Geometric discrepancy: 0.1334

The information below is about J3_4V88_078

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_67856.1

Basepair signature

cWW-F-cWW-F-F-cSW-F-cWW

Number of instances in this motif group

5

Unit IDs

4KZY|1|i|A|40
4KZY|1|i|G|41
*
4KZY|1|i|C|471
4KZY|1|i|G|472
4KZY|1|i|C|473
4KZY|1|i|A|474
4KZY|1|i|A|475
4KZY|1|i|A|476
4KZY|1|i|U|477
*
4KZY|1|i|A|502
4KZY|1|i|G|503
4KZY|1|i|U|504

Current chains

Chain i

18S Ribosomal RNA

Nearby chains

Chain X

40S Ribosomal Protein S23