J3_4KZY_013

3D structure

PDB id

4KZY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 40S ribosomal subunit in complex with eIF1 and eIF1A.

Experimental method

X-RAY DIFFRACTION

Resolution

7.01 Å

Loop

Sequence

AGAUUAAG*CGCGCAAAU*AGU

Length

20 nucleotides

Bulged bases

4KZY|1|i|A|46

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4KZY_013 not in the Motif Atlas

Homologous match to J3_8P9A_069

Geometric discrepancy: 0.118

The information below is about J3_8P9A_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_63856.1

Basepair signature

cWW-cWW-cSW-F-cWW-F-tHH-F-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

4KZY|1|i|A|40
4KZY|1|i|G|41
4KZY|1|i|A|42
4KZY|1|i|U|43
4KZY|1|i|U|44
4KZY|1|i|A|45
4KZY|1|i|A|46
4KZY|1|i|G|47
*
4KZY|1|i|C|469
4KZY|1|i|G|470
4KZY|1|i|C|471
4KZY|1|i|G|472
4KZY|1|i|C|473
4KZY|1|i|A|474
4KZY|1|i|A|475
4KZY|1|i|A|476
4KZY|1|i|U|477
*
4KZY|1|i|A|502
4KZY|1|i|G|503
4KZY|1|i|U|504

Current chains

Chain i

18S Ribosomal RNA

Nearby chains

Chain X

40S Ribosomal Protein S23