J3_4KZZ_005
3D structure
- PDB id
- 4KZZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 40S ribosomal subunit in complex with mRNA, initiator tRNA and eIF1A
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 7.03 Å
Loop
- Sequence
- UGGA*UAC*GGAA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4KZZ_005 not in the Motif Atlas
- Homologous match to J3_4V88_036
- Geometric discrepancy: 0.1159
- The information below is about J3_4V88_036
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_52655.2
- Basepair signature
- cWW-tSH-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
4KZZ|1|i|U|1221
4KZZ|1|i|G|1222
4KZZ|1|i|G|1223
4KZZ|1|i|A|1224
*
4KZZ|1|i|U|1525
4KZZ|1|i|A|1526
4KZZ|1|i|C|1527
*
4KZZ|1|i|G|1633
4KZZ|1|i|G|1634
4KZZ|1|i|A|1635
4KZZ|1|i|A|1636
Current chains
- Chain i
- 18S Ribosomal RNA
Nearby chains
- Chain F
- 40S Ribosomal Protein S5
- Chain Q
- 40S Ribosomal Protein S16
- Chain S
- 40S Ribosomal Protein S18
- Chain T
- 40S Ribosomal Protein S19
- Chain j
- Transfer RNA; tRNA
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