J3_4KZZ_010
3D structure
- PDB id
- 4KZZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 40S ribosomal subunit in complex with mRNA, initiator tRNA and eIF1A
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 7.03 Å
Loop
- Sequence
- CACUG*CGUGAUGG*CGAG
- Length
- 17 nucleotides
- Bulged bases
- 4KZZ|1|i|U|1530, 4KZZ|1|i|G|1598
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4KZZ_010 not in the Motif Atlas
- Homologous match to J3_4V88_041
- Geometric discrepancy: 0.2172
- The information below is about J3_4V88_041
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_37047.3
- Basepair signature
- cWW-cSS-cSH-F-tWH-F-cWW-cSH-F-F-F-cWW
- Number of instances in this motif group
- 5
Unit IDs
4KZZ|1|i|C|1527
4KZZ|1|i|A|1528
4KZZ|1|i|C|1529
4KZZ|1|i|U|1530
4KZZ|1|i|G|1531
*
4KZZ|1|i|C|1592
4KZZ|1|i|G|1593
4KZZ|1|i|U|1594
4KZZ|1|i|G|1595
4KZZ|1|i|A|1596
4KZZ|1|i|U|1597
4KZZ|1|i|G|1598
4KZZ|1|i|G|1599
*
4KZZ|1|i|C|1630
4KZZ|1|i|G|1631
4KZZ|1|i|A|1632
4KZZ|1|i|G|1633
Current chains
- Chain i
- 18S Ribosomal RNA
Nearby chains
- Chain F
- 40S Ribosomal Protein S5
- Chain S
- 40S Ribosomal Protein S18
- Chain T
- 40S Ribosomal Protein S19
- Chain Z
- 40S Ribosomal Protein S25
- Chain j
- Transfer RNA; tRNA
Coloring options: