J3_4KZZ_013

3D structure

PDB id

4KZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 40S ribosomal subunit in complex with mRNA, initiator tRNA and eIF1A

Experimental method

X-RAY DIFFRACTION

Resolution

7.03 Å

Loop

Sequence

AGAUUAAG*CGCGCAAAU*AGU

Length

20 nucleotides

Bulged bases

4KZZ|1|i|A|46

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4KZZ_013 not in the Motif Atlas

Homologous match to J3_8P9A_069

Geometric discrepancy: 0.118

The information below is about J3_8P9A_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_63856.1

Basepair signature

cWW-cWW-cSW-F-cWW-F-tHH-F-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

4KZZ|1|i|A|40
4KZZ|1|i|G|41
4KZZ|1|i|A|42
4KZZ|1|i|U|43
4KZZ|1|i|U|44
4KZZ|1|i|A|45
4KZZ|1|i|A|46
4KZZ|1|i|G|47
*
4KZZ|1|i|C|469
4KZZ|1|i|G|470
4KZZ|1|i|C|471
4KZZ|1|i|G|472
4KZZ|1|i|C|473
4KZZ|1|i|A|474
4KZZ|1|i|A|475
4KZZ|1|i|A|476
4KZZ|1|i|U|477
*
4KZZ|1|i|A|502
4KZZ|1|i|G|503
4KZZ|1|i|U|504

Current chains

Chain i

18S Ribosomal RNA

Nearby chains

Chain X

40S Ribosomal Protein S23