J3_4KZZ_015

3D structure

PDB id

4KZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 40S ribosomal subunit in complex with mRNA, initiator tRNA and eIF1A

Experimental method

X-RAY DIFFRACTION

Resolution

7.03 Å

Loop

Sequence

AGAG*CAG*CUGGAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4KZZ_015 not in the Motif Atlas

Homologous match to J3_8P9A_073

Geometric discrepancy: 0.1842

The information below is about J3_8P9A_073

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_97642.2

Basepair signature

cWW-tSH-F-F-cWW-F-tWW-cWW

Number of instances in this motif group

3

Unit IDs

4KZZ|1|i|A|812
4KZZ|1|i|G|813
4KZZ|1|i|A|814
4KZZ|1|i|G|815
*
4KZZ|1|i|C|825
4KZZ|1|i|A|826
4KZZ|1|i|G|827
*
4KZZ|1|i|C|839
4KZZ|1|i|U|840
4KZZ|1|i|G|841
4KZZ|1|i|G|842
4KZZ|1|i|A|843
4KZZ|1|i|U|844

Current chains

Chain i

18S Ribosomal RNA

Nearby chains

Chain E

40S Ribosomal Protein S4X

Chain J

40S Ribosomal Protein S9

Chain Y

40S Ribosomal Protein S24