J3_4L47_005

3D structure

PDB id

4L47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-U on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.22 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4L47_005 not in the Motif Atlas

Homologous match to J3_4LFB_002

Geometric discrepancy: 0.118

The information below is about J3_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85722.1

Basepair signature

cWW-F-F-cSS-F-cWW-tHH-tWW-F-tWH-tHS-cSH-cWW

Number of instances in this motif group

5

Unit IDs

4L47|1|QA|C|936
4L47|1|QA|A|937
4L47|1|QA|A|938
4L47|1|QA|G|939
*
4L47|1|QA|C|1344
4L47|1|QA|U|1345
4L47|1|QA|A|1346
4L47|1|QA|G|1347
4L47|1|QA|U|1348
4L47|1|QA|A|1349
4L47|1|QA|A|1350
*
4L47|1|QA|U|1372
4L47|1|QA|G|1373
4L47|1|QA|A|1374
4L47|1|QA|A|1375
4L47|1|QA|U|1376
4L47|1|QA|A|1377
4L47|1|QA|C|1378
4L47|1|QA|G|1379

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QG

30S ribosomal protein S7

Chain QI

30S ribosomal protein S9