J3_4L71_013

3D structure

PDB id

4L71 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-A on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

CAAUG*CCCAGUUC*GCCG

Length

17 nucleotides

Bulged bases

4L71|1|QA|U|1240

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4L71_013 not in the Motif Atlas

Homologous match to J3_4LFB_009

Geometric discrepancy: 0.158

The information below is about J3_4LFB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37047.6

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

4L71|1|QA|C|1237
4L71|1|QA|A|1238
4L71|1|QA|A|1239
4L71|1|QA|U|1240
4L71|1|QA|G|1241
*
4L71|1|QA|C|1296
4L71|1|QA|C|1297
4L71|1|QA|C|1298
4L71|1|QA|A|1299
4L71|1|QA|G|1300
4L71|1|QA|U|1301
4L71|1|QA|U|1302
4L71|1|QA|C|1303
*
4L71|1|QA|G|1334
4L71|1|QA|C|1335
4L71|1|QA|C|1336
4L71|1|QA|G|1337

Current chains

Chain QA

16S Ribosomal RNA

Nearby chains

Chain QG

30S ribosomal protein S7

Chain QM

30S ribosomal protein S13

Chain QU

30S ribosomal protein Thx