J3_4L71_023

3D structure

PDB id

4L71 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-A on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

UUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4L71_023 not in the Motif Atlas

Homologous match to J3_7RQB_010

Geometric discrepancy: 0.0911

The information below is about J3_7RQB_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_89368.3

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

4L71|1|RA|U|2091
4L71|1|RA|U|2092
4L71|1|RA|G|2093
*
4L71|1|RA|C|2196
4L71|1|RA|U|2197
4L71|1|RA|A|2198
4L71|1|RA|A|2199
4L71|1|RA|C|2205
*
4L71|1|RA|G|2219
4L71|1|RA|G|2224
4L71|1|RA|A|2225
4L71|1|RA|C|2226
4L71|1|RA|A|2227
4L71|1|RA|G|2228

Current chains

Chain RA

23S Ribosomal RNA

Nearby chains

Chain R1

50S ribosomal protein L28

Chain RD

50S ribosomal protein L2

Chain RI

50S ribosomal protein L9