Motif J3_89368.3 Version J3_89368.3 of this group appears in releases 3.54 to 3.86
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | break | 10 | 11 | 12 | 13 | 1-13 | 2-12 | 3-11 | 4-13 | 5-8 | 6-7 | 9-10 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J3_5J7L_044 | 5J7L | 0.0000 | 1 | Kink-turn in J3 | DA | LSU rRNA | G | 2223 | G | 2224 | A | 2225 | C | 2226 | A | 2227 | G | 2228 | * | C | 2091 | U | 2092 | G | 2093 | * | C | 2196 | U | 2197 | A | 2199 | C | 2200 | cWW | tSH | tHW | ntWS | tHH | cWW | cWW |
| 2 | J3_7RQB_010 | 7RQB | 0.1245 | 1 | 1A | LSU rRNA | G | 2223 | G | 2224 | A | 2225 | C | 2226 | A | 2227 | G | 2228 | * | U | 2091 | U | 2092 | G | 2093 | * | C | 2196 | U | 2197 | A | 2199 | C | 2200 | cWW | tSH | tHW | tHH | cWW | cWW | ||
| 3 | J3_7A0S_009 | 7A0S | 0.1508 | 1 | X | LSU rRNA | G | 2202 | G | 2203 | A | 2204 | C | 2205 | C | 2206 | G | 2207 | * | U | 2074 | U | 2075 | G | 2076 | * | C | 2179 | U | 2180 | A | 2182 | C | 2183 | cWW | tSH | tHW | tHH | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUG*CUAAC*GGACAG | 1 |
| UUG*CUAAC*GGACAG | 1 |
| UUG*CUAAC*GGACCG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| U*UAA*GACA | 2 |
| U*UAA*GACC | 1 |
Release history
| Release | 3.54 | 3.55 | 3.56 | 3.57 | 3.58 | 3.59 | 3.60 | 3.61 | 3.62 | 3.63 | 3.64 | 3.65 | 3.66 | 3.67 | 3.68 | 3.69 | 3.70 | 3.71 | 3.72 | 3.73 | 3.74 | 3.75 | 3.76 | 3.77 | 3.78 | 3.79 | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2022-02-02 | 2022-03-02 | 2022-03-30 | 2022-04-27 | 2022-05-25 | 2022-06-22 | 2022-07-20 | 2022-08-17 | 2022-10-12 | 2022-11-09 | 2022-12-07 | 2023-01-04 | 2023-02-01 | 2023-03-01 | 2023-03-29 | 2023-04-26 | 2023-05-24 | 2023-06-21 | 2023-07-19 | 2023-08-16 | 2023-09-13 | 2023-10-11 | 2023-11-08 | 2023-12-06 | 2024-01-03 | 2024-01-03 | 2024-01-31 | 2024-02-28 | 2024-03-27 | 2024-04-24 | 2024-05-22 | 2024-06-19 | 2024-07-17 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- Kink-turn in J3 (1)
- Basepair signature
- cWW-tSH-tHW-F-cWW-tHH-cWW
- Heat map statistics
- Min 0.12 | Avg 0.09 | Max 0.15
Coloring options: