J3_4LF6_005

3D structure

PDB id

4LF6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.31 Å

Loop

Sequence

CUUG*CAG*CUUACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4LF6_005 not in the Motif Atlas

Homologous match to J3_4LFB_005

Geometric discrepancy: 0.088

The information below is about J3_4LFB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_84394.1

Basepair signature

cWW-tWH-F-F-cWW-F-cWW-F

Number of instances in this motif group

2

Unit IDs

4LF6|1|A|C|990
4LF6|1|A|U|991
4LF6|1|A|U|992
4LF6|1|A|G|993
*
4LF6|1|A|C|1045
4LF6|1|A|A|1046
4LF6|1|A|G|1047
*
4LF6|1|A|C|1210
4LF6|1|A|U|1211
4LF6|1|A|U|1212
4LF6|1|A|A|1213
4LF6|1|A|C|1214
4LF6|1|A|G|1215

Current chains

Chain A

16S rRNA

Nearby chains

Chain N

ribosomal protein S14